The genetics and genomics of the drought response in Populus.
Identifieur interne : 003D05 ( Main/Exploration ); précédent : 003D04; suivant : 003D06The genetics and genomics of the drought response in Populus.
Auteurs : Nathaniel Robert Street [Royaume-Uni] ; Oskar Skogström ; Andreas Sjödin ; James Tucker ; Maricela Rodríguez-Acosta ; Peter Nilsson ; Stefan Jansson ; Gail TaylorSource :
- The Plant journal : for cell and molecular biology [ 0960-7412 ] ; 2006.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : RNA, Messenger.
- genetics : Populus.
- Disasters, Expressed Sequence Tags, Genome, Plant, Quantitative Trait Loci, Species Specificity.
Abstract
The genetic nature of tree adaptation to drought stress was examined by utilizing variation in the drought response of a full-sib second generation (F(2)) mapping population from a cross between Populus trichocarpa (93-968) and P. deltoides Bart (ILL-129) and known to be highly divergent for a vast range of phenotypic traits. We combined phenotyping, quantitative trait loci (QTL) analysis and microarray experiments to demonstrate that 'genetical genomics' can be used to provide information on adaptation at the species level. The grandparents and F(2) population were subjected to soil drying, and contrasting responses to drought across genotypes, including leaf coloration, expansion and abscission, were observed, and QTL for these traits mapped. A subset of extreme genotypes exhibiting extreme sensitivity and insensitivity to drought on the basis of leaf abscission were defined, and microarray experiments conducted on these genotypes and the grandparent species. The extreme genotype groups induced a different set of genes: 215 and 125 genes differed in their expression response between groups in control and drought, respectively, suggesting species adaptation at the gene expression level. Co-location of differentially expressed genes with drought-specific and drought-responsive QTLs was examined, and these may represent candidate genes contributing to the variation in drought response.
DOI: 10.1111/j.1365-313X.2006.02864.x
PubMed: 17005011
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The genetics and genomics of the drought response in Populus.</title><author><name sortKey="Street, Nathaniel Robert" sort="Street, Nathaniel Robert" uniqKey="Street N" first="Nathaniel Robert" last="Street">Nathaniel Robert Street</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, University of Southampton, Southampton SO16 7PX, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>School of Biological Sciences, University of Southampton, Southampton SO16 7PX</wicri:regionArea><wicri:noRegion>Southampton SO16 7PX</wicri:noRegion></affiliation></author><author><name sortKey="Skogstrom, Oskar" sort="Skogstrom, Oskar" uniqKey="Skogstrom O" first="Oskar" last="Skogström">Oskar Skogström</name></author><author><name sortKey="Sjodin, Andreas" sort="Sjodin, Andreas" uniqKey="Sjodin A" first="Andreas" last="Sjödin">Andreas Sjödin</name></author><author><name sortKey="Tucker, James" sort="Tucker, James" uniqKey="Tucker J" first="James" last="Tucker">James Tucker</name></author><author><name sortKey="Rodriguez Acosta, Maricela" sort="Rodriguez Acosta, Maricela" uniqKey="Rodriguez Acosta M" first="Maricela" last="Rodríguez-Acosta">Maricela Rodríguez-Acosta</name></author><author><name sortKey="Nilsson, Peter" sort="Nilsson, Peter" uniqKey="Nilsson P" first="Peter" last="Nilsson">Peter Nilsson</name></author><author><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name></author><author><name sortKey="Taylor, Gail" sort="Taylor, Gail" uniqKey="Taylor G" first="Gail" last="Taylor">Gail Taylor</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2006">2006</date><idno type="RBID">pubmed:17005011</idno><idno type="pmid">17005011</idno><idno type="doi">10.1111/j.1365-313X.2006.02864.x</idno><idno type="wicri:Area/Main/Corpus">003D19</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003D19</idno><idno type="wicri:Area/Main/Curation">003D19</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">003D19</idno><idno type="wicri:Area/Main/Exploration">003D19</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The genetics and genomics of the drought response in Populus.</title><author><name sortKey="Street, Nathaniel Robert" sort="Street, Nathaniel Robert" uniqKey="Street N" first="Nathaniel Robert" last="Street">Nathaniel Robert Street</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, University of Southampton, Southampton SO16 7PX, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>School of Biological Sciences, University of Southampton, Southampton SO16 7PX</wicri:regionArea><wicri:noRegion>Southampton SO16 7PX</wicri:noRegion></affiliation></author><author><name sortKey="Skogstrom, Oskar" sort="Skogstrom, Oskar" uniqKey="Skogstrom O" first="Oskar" last="Skogström">Oskar Skogström</name></author><author><name sortKey="Sjodin, Andreas" sort="Sjodin, Andreas" uniqKey="Sjodin A" first="Andreas" last="Sjödin">Andreas Sjödin</name></author><author><name sortKey="Tucker, James" sort="Tucker, James" uniqKey="Tucker J" first="James" last="Tucker">James Tucker</name></author><author><name sortKey="Rodriguez Acosta, Maricela" sort="Rodriguez Acosta, Maricela" uniqKey="Rodriguez Acosta M" first="Maricela" last="Rodríguez-Acosta">Maricela Rodríguez-Acosta</name></author><author><name sortKey="Nilsson, Peter" sort="Nilsson, Peter" uniqKey="Nilsson P" first="Peter" last="Nilsson">Peter Nilsson</name></author><author><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name></author><author><name sortKey="Taylor, Gail" sort="Taylor, Gail" uniqKey="Taylor G" first="Gail" last="Taylor">Gail Taylor</name></author></analytic><series><title level="j">The Plant journal : for cell and molecular biology</title><idno type="ISSN">0960-7412</idno><imprint><date when="2006" type="published">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Disasters (MeSH)</term><term>Expressed Sequence Tags (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Populus (genetics)</term><term>Quantitative Trait Loci (MeSH)</term><term>RNA, Messenger (genetics)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN messager (génétique)</term><term>Catastrophes (MeSH)</term><term>Génome végétal (MeSH)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Populus (génétique)</term><term>Spécificité d'espèce (MeSH)</term><term>Étiquettes de séquences exprimées (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Messenger</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN messager</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Disasters</term><term>Expressed Sequence Tags</term><term>Genome, Plant</term><term>Quantitative Trait Loci</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Catastrophes</term><term>Génome végétal</term><term>Locus de caractère quantitatif</term><term>Spécificité d'espèce</term><term>Étiquettes de séquences exprimées</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The genetic nature of tree adaptation to drought stress was examined by utilizing variation in the drought response of a full-sib second generation (F(2)) mapping population from a cross between Populus trichocarpa (93-968) and P. deltoides Bart (ILL-129) and known to be highly divergent for a vast range of phenotypic traits. We combined phenotyping, quantitative trait loci (QTL) analysis and microarray experiments to demonstrate that 'genetical genomics' can be used to provide information on adaptation at the species level. The grandparents and F(2) population were subjected to soil drying, and contrasting responses to drought across genotypes, including leaf coloration, expansion and abscission, were observed, and QTL for these traits mapped. A subset of extreme genotypes exhibiting extreme sensitivity and insensitivity to drought on the basis of leaf abscission were defined, and microarray experiments conducted on these genotypes and the grandparent species. The extreme genotype groups induced a different set of genes: 215 and 125 genes differed in their expression response between groups in control and drought, respectively, suggesting species adaptation at the gene expression level. Co-location of differentially expressed genes with drought-specific and drought-responsive QTLs was examined, and these may represent candidate genes contributing to the variation in drought response.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17005011</PMID><DateCompleted><Year>2006</Year><Month>12</Month><Day>12</Day></DateCompleted><DateRevised><Year>2008</Year><Month>11</Month><Day>21</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0960-7412</ISSN><JournalIssue CitedMedium="Print"><Volume>48</Volume><Issue>3</Issue><PubDate><Year>2006</Year><Month>Nov</Month></PubDate></JournalIssue><Title>The Plant journal : for cell and molecular biology</Title><ISOAbbreviation>Plant J</ISOAbbreviation></Journal><ArticleTitle>The genetics and genomics of the drought response in Populus.</ArticleTitle><Pagination><MedlinePgn>321-41</MedlinePgn></Pagination><Abstract><AbstractText>The genetic nature of tree adaptation to drought stress was examined by utilizing variation in the drought response of a full-sib second generation (F(2)) mapping population from a cross between Populus trichocarpa (93-968) and P. deltoides Bart (ILL-129) and known to be highly divergent for a vast range of phenotypic traits. We combined phenotyping, quantitative trait loci (QTL) analysis and microarray experiments to demonstrate that 'genetical genomics' can be used to provide information on adaptation at the species level. The grandparents and F(2) population were subjected to soil drying, and contrasting responses to drought across genotypes, including leaf coloration, expansion and abscission, were observed, and QTL for these traits mapped. A subset of extreme genotypes exhibiting extreme sensitivity and insensitivity to drought on the basis of leaf abscission were defined, and microarray experiments conducted on these genotypes and the grandparent species. The extreme genotype groups induced a different set of genes: 215 and 125 genes differed in their expression response between groups in control and drought, respectively, suggesting species adaptation at the gene expression level. Co-location of differentially expressed genes with drought-specific and drought-responsive QTLs was examined, and these may represent candidate genes contributing to the variation in drought response.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Street</LastName><ForeName>Nathaniel Robert</ForeName><Initials>NR</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, University of Southampton, Southampton SO16 7PX, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Skogström</LastName><ForeName>Oskar</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Sjödin</LastName><ForeName>Andreas</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Tucker</LastName><ForeName>James</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Rodríguez-Acosta</LastName><ForeName>Maricela</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Nilsson</LastName><ForeName>Peter</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Jansson</LastName><ForeName>Stefan</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Taylor</LastName><ForeName>Gail</ForeName><Initials>G</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2006</Year><Month>09</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Plant J</MedlineTA><NlmUniqueID>9207397</NlmUniqueID><ISSNLinking>0960-7412</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D004190" MajorTopicYN="N">Disasters</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020224" MajorTopicYN="N">Expressed Sequence Tags</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2006</Year><Month>9</Month><Day>29</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2006</Year><Month>12</Month><Day>13</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2006</Year><Month>9</Month><Day>29</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">17005011</ArticleId><ArticleId IdType="pii">TPJ2864</ArticleId><ArticleId IdType="doi">10.1111/j.1365-313X.2006.02864.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Royaume-Uni</li></country></list><tree><noCountry><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name><name sortKey="Nilsson, Peter" sort="Nilsson, Peter" uniqKey="Nilsson P" first="Peter" last="Nilsson">Peter Nilsson</name><name sortKey="Rodriguez Acosta, Maricela" sort="Rodriguez Acosta, Maricela" uniqKey="Rodriguez Acosta M" first="Maricela" last="Rodríguez-Acosta">Maricela Rodríguez-Acosta</name><name sortKey="Sjodin, Andreas" sort="Sjodin, Andreas" uniqKey="Sjodin A" first="Andreas" last="Sjödin">Andreas Sjödin</name><name sortKey="Skogstrom, Oskar" sort="Skogstrom, Oskar" uniqKey="Skogstrom O" first="Oskar" last="Skogström">Oskar Skogström</name><name sortKey="Taylor, Gail" sort="Taylor, Gail" uniqKey="Taylor G" first="Gail" last="Taylor">Gail Taylor</name><name sortKey="Tucker, James" sort="Tucker, James" uniqKey="Tucker J" first="James" last="Tucker">James Tucker</name></noCountry><country name="Royaume-Uni"><noRegion><name sortKey="Street, Nathaniel Robert" sort="Street, Nathaniel Robert" uniqKey="Street N" first="Nathaniel Robert" last="Street">Nathaniel Robert Street</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 003D05 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 003D05 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:17005011
|texte= The genetics and genomics of the drought response in Populus.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:17005011" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |